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Skip to Search Results- 12Biological Sciences, Department of
- 12Biological Sciences, Department of/Journal Articles (Biological Sciences)
- 9Computing Science, Department of
- 9Computing Science, Department of/Technical Reports (Computing Science)
- 8Agricultural, Food and Nutritional Science, Department of
- 8Agricultural, Food and Nutritional Science, Department of/Journal Articles (Agricultural, Food and Nutritional Science)
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2005
Stothard, P., Van Domselaar, G., Cruz, J., Wishart, D.S., Shrivistava, S., Guo, A.C., O'Neill, B., Ellison, M.J.
BacMap is an interactive visual database containing fully labeled, zoomable and searchable chromosome maps from more than 170 bacterial (archaebacterial and eubacterial) species. It uses a recently developed visualization tool (CGView) to generate highresolution circular genome maps from sequence...
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2005
Xia, Q., Chen, J., Dai, M., Ye, C., Wang, J., Li, S., Li, R., Zhou, Z., Ruan, J., Hu, Y., Yu, G., Yang, H., He, X., Yu, Jun, Xiang, Z., Yuan, H., Lu, C., Feng, T.
The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a ~6X draft genome sequence of the domestic silkworm (Bombyx mori ), SilkDB provides an integrated representation of the...
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1996
Li, John, Ozsu, M. Tamer, Szafron, Duane
Technical report TR96-12. Modeling moving objects has become a topic of increasing interest in the area of video databases. Two key aspects of such modeling are object spatial and temporal relationships. In this paper we introduce an innovative way to represent the trajectory of a single...
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PolySearch: A web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites
Download2008
Stothard, P., Damaraju, S., Wishart, D.S., Young, N., Cheng, D., Knox, C.
A particular challenge in biomedical text mining is to find ways of handling ‘comprehensive’ or ‘associative’ queries such as ‘Find all genes associated with breast cancer’. Given that many queries in genomics, proteomics or metabolomics involve these kind of comprehensive searches we believe...
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2004
Sander, Joerg, Moise, Gabriela, Rafiei, Davood
Technical report TR04-24. This thesis studies the problem of effectively finding related pages on the Web, where given the URL of a page, one wants to find other pages that are on the same topic. This is a both simple and natural way of searching for resources without being forced to formulate a...
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2008
Stothard, Paul. , Grant, Jason R.
The CGView Server generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. Sequences can be supplied in raw, FASTA, GenBank or EMBL format. Additional feature or analysis information can be submitted in the...
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1997
Ozsu, M. Tamer, Li, John, Szafron, Duane
Technical report TR97-01. Declarative query languages are an important feature of database management systems and have played an important role in their success. As database management technology enters the multimedia information system domain, the availability of query languages for multimedia...
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2009
Bassett, E., Wishart, D.S., Lu, P., MacDonnell, C., Berjanskii, M., Zhou, J., Liang, J., Zhou, Y., Cruz, J.A., Lin, G., Tang, P.
GeNMR (GEnerate NMR structures) is a web server for rapidly generating accurate 3D protein structures using sequence data, NOE-based distance restraints and/or NMR chemical shifts as input. GeNMR accepts distance restraints in XPLOR or CYANA format as well as chemical shift files in either SHIFTY...
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1996
Ozsu, M. Tamer, Li, John, Szafron, Duane
Technical report TR96-06. Video modeling has become a topic of increasing interest in the area of multimedia research. One of the key aspects in the video medium is spatial relationships. In this paper we propose a spatial representation, based on the temporal interval algebra, for specifying...