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- 12Biological Sciences, Department of
- 12Biological Sciences, Department of/Journal Articles (Biological Sciences)
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- 9Computing Science, Department of/Technical Reports (Computing Science)
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- 8Agricultural, Food and Nutritional Science, Department of/Journal Articles (Agricultural, Food and Nutritional Science)
PolySearch: A web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolitesDownload
A particular challenge in biomedical text mining is to find ways of handling ‘comprehensive’ or ‘associative’ queries such as ‘Find all genes associated with breast cancer’. Given that many queries in genomics, proteomics or metabolomics involve these kind of comprehensive searches we believe...
Modeling and Querying Multimedia Data
Technical report TR98-05. Amidst the dramatic developments of computer technology in the last decades, we have seen a growing interest in supporting multimedia data. Compared with traditional data, the most noticeable features of multimedia data are their spatiality (the spatial layout of...
Lewis, A., Wishart, D.S., Guo, A.C., Gautam, B., Tzur, D., Sobsey, C.A., Shaykhutdinov, R., Fradette, R., De Souza, A., Cruz, J.A., Xiong, Y., Bouatra, S., Mandal, R., Psychogios, N., Sinelnikov, I., Vogel, H.J., Fang, L., Peng, J., Xia, J., Li, L., Knox, C., Shrivastava, S., Clements, M., Lim, E., Eisner, R., Cheng, D., Dawe, M., Zuniga, A., Young, N., Jia, L., Grenier, R., Hau, D.D., Huang, P., Nazyrova, A., Liu, P., Forsythe, I., Dong, E., Clive, D.
The Human Metabolome Database (HMDB, http:// www.hmdb.ca) is a richly annotated resource that is designed to address the broad needs of biochemists, clinical chemists, physicians, medical geneticists, nutritionists and members of the metabolomics community. Since its first release in 2007, the...
Technical report TR95-14. Multimedia applications need support from an underlying multimedia storage system to store and retrieve multimedia objects. The presence of spatio-temporal and composition relationships between the objects, their large volume and their inherent distribution pose...
The CGView Server generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. Sequences can be supplied in raw, FASTA, GenBank or EMBL format. Additional feature or analysis information can be submitted in the...
Originally released in 2005, BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains fully labeled, zoomable and searchable chromosome maps for essentially all sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level...
Technical report TR96-02. Video modeling has become a topic of increasing interest in the area of multimedia research. One of the key aspects in the video medium is the temporal relationship between video frames. In this report1 we propose a tree based model for specifying spatial and temporal...
Technical report TR93-10. The object-oriented paradigm of computing has started to have a significant influence on many areas of information and data processing, including database systems. This thesis focuses on the various issues and aspects governing the implementation design and development...
Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant speciesDownload
Background Understanding how species-specific microRNAs (miRNAs) contribute to species-specific phenotypes is a central topic in biology. This study aimed to elucidate the role of ruminant-specific miRNAs in shaping mRNA expression divergence between ruminant and non-ruminant species. ...