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A first generation whole genome RH map of the river buffalo with comparison to domestic cattle
Download2008
Santana, Andre M., Tonhati, Humberto, Greco, Anthony J., Mishra, Bina, Cai, Zhipeng, Kumar, S. T. Bharani, Tantia, Madhu S., Jones, Brittany C., Saradhi, G. Pardha, Miziara, Melissa N., Kumar, M. Aravind, Kochan, Kelli J., Goldammer, Tom, Brunner, Ronald M., Caetano, Alexandre R., Weikard, Rosemarie, Womack, James E., Mathew, Boby, Kumar, Satish, Pelai, Vanderlei A., Filho, Edson A. R., Jeong, Jooha, Prasad, Aparna, Vijh, Ramesh K., Lin, Guohui, Moore, Stephen, Galvao, Stephan R., Mariani, Paola, Grant, Jason R., Stafuzza, Nedenia B., Fornitano, Larissa C., Riggs, Penny K., Stothard, Paul, Amaral, M. Elisabete
Background The recently constructed river buffalo whole-genome radiation hybrid panel (BBURH5000) has already been used to generate preliminary radiation hybrid (RH) maps for several chromosomes, and buffalo-bovine comparative chromosome maps have been constructed. Here, we present the...
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2003
Jiang, Tao, Lin, Guohui, Chen, Zhi-Zhong
Technical report TR03-06. Given a set of species and their similarity data, an important problem in evolutionary biology is how to reconstruct a phylogeny (also called evolutionary tree) so that species are close in the phylogeny if and only if they have high similarity. Assume that the...
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2005
Wu, Gang, Lin, Guohui, You, Jia-Huai
Technical report TR05-05. A lookahead branch-and-bound algorithm is proposed for solving the Maximum Quartet Consistency Problem where the input is a complete set of quartets on the taxa and the goal is to construct a phylogeny which satisfies the maximum number of given quartets. Such a...
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2015
Stothard, Paul, Wang, Yining, Lin, Guohui, Wylie, Tim
Background Despite ongoing reductions in the cost of sequencing technologies, whole genome SNP genotype imputation is often used as an alternative for obtaining abundant SNP genotypes for genome wide association studies. Several existing genotype imputation methods can be efficient for this...
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2012
Wang, Lusheng, Moore, Steve S., Cai, Zhipeng, Goebel, Randy, Lin, Guohui, Wang, Yining, Stothard, Paul
Background Single nucleotide polymorphism (SNP) genotyping assays normally give rise to certain percents of no-calls; the problem becomes severe when the target organisms, such as cattle, do not have a high resolution genomic sequence. Missing SNP genotypes, when related to target traits, would...
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2004
Cai, Zhipeng, Lin, Guohui, Xue, Guoliang
Technical report TR04-12. For the Capacitated Multicast Routing Problem, we considered two models which are the Multicast k-Path Routing and the Multicast k-Tree Routing. We presented two improved approximation algorithms for them, which have worst case performance ratios of 3 and (2 + ρ) (ρ is...
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2005
Xu, Dong, Wu, Xiaomeng, Wan, Xiu-Feng, Lin, Guohui, Gang, Wu
Technical report TR05-06. The availability of complete genomic sequences allows us to infer the evolutionary footprints between species in a global strategy. However, the length of these genomic sequences poses a challenge on computational efficiency and optimality of information representation...
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2008
Malhotra, Baljeet, Lin, Guohui
Technical report TR08-07. In gene expression microarray data analysis, biclustering has been demonstrated to be one of the most effective methods for discovering gene expression patterns under various conditions. We present in this study a framework to take advantage of the homogeneously...