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PROTEUS2: A Web Server for Comprehensive Protein Structure Prediction and Structure-Based Annotation
Download2008
Shrivistava, S., Berjanskii, M., Wishart, D.S., Cruz, J.A., Arndt, D., Montgomerie, S.
PROTEUS2 is a web server designed to support comprehensive protein structure prediction and structure-based annotation. PROTEUS2 accepts either single sequences (for directed studies) or multiple sequences (for whole proteome annotation) and predicts the secondary and, if possible, tertiary...
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ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun
Download2005
Ye, C., Wang, J., Li, S., Li, R., Wong, G.K.S., Ye, J., Yang, H., Han, Y., Yu, J.
We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist at high copy numbers across the genome and must not be so old that they are no longer...
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Redefining the tool condition monitoring: A framework for machining quality prediction and tool life management
DownloadSpring 2021
Tool wear morphology is one of the established topics in the field of manufacturing. Wear morphology monitoring offers significant information about the machining process such as, the condition of the tool and the quality of the machined component, but the information has not been utilized to its...
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2022-04-05
Konnikov, Alla, Rets, Irina, Hughes, Karen D., Al-Ani, Jabir Alshehabi, Denier, Nicole, Ding, Lei, Hu, Shenggang, Hu, Yang, Jiang, Bei, Kong, Linglong, Tarafdar, Monideepa, Yu, Dengdeng
The BIAS case study describes the aims and objectives of the ‘BIAS: Responsible AI for labour market equality’ project, the research process, and the lessons learned at the mid-way point of the project. It draws on two main sources of information: interviews conducted internally with six founding...
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Fall 2011
In this dissertation we discuss problems of search, inference and opponent modelling in imperfect information games in the context of creating a computer player for the popular german card game skat. In so doing, we demonstrate three major contributions to the field of artificial intelligence...
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The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: Evidence for programmed translational frameshifting
Download2008
Rosengarten, R.D., Sperling, E.A., Leys, S.P., Dellaporta, S.L., Moreno, M.A.
Background: Mitochondrial genomes (mtDNA) of numerous sponges have been sequenced as part of an ongoing effort to resolve the class-level phylogeny of the Porifera, as well as to place the various lower metazoan groups on the animal-kingdom tree. Most recently, the partial mtDNA of two glass...
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2014
Rockwell, Geoffrey, Chartier, Ryan, Simpson, John, Dyrbye, Amy
What can we learn from the discourse around text tools? More than might be expected. The development of text analysis tools has been a feature of computing in the humanities since IBM supported Father Busa's production of the Index Thomisticus (Tasman 1957). Despite the importance of tools in the...
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2019-10-01
SSHRC IG awarded 2020: the goal of this project is to uncover the work and decisions involved in collecting, organizing, and changing the data used by algorithms, using business ethnographic methodology. This understanding is ultimately critical to revealing how algorithms work, and to revealing...
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Fall 2016
Background. Tools and resources (TRs) can help to prevent obesity in children, particularly in settings that are accessible to families and well-aligned with chronic disease prevention, such as primary care. To date, little is known about the TRs that primary care providers (PCPs) currently use...