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- 1ABC transporter
- 1Approximation algorithms
- 1Chordal
- 1Constrained bipartite matching
- 1Efficient algorithm
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2003
Jiang, Tao, Lin, Guohui, Chen, Zhi-Zhong
Technical report TR03-06. Given a set of species and their similarity data, an important problem in evolutionary biology is how to reconstruct a phylogeny (also called evolutionary tree) so that species are close in the phylogeny if and only if they have high similarity. Assume that the...
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Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology
Download2016-05-31
Rempe, Caroline S , Stewart, C Neal , Melhonian, Michael , Wong, Gane Ka-Shu , Staton, Margaret E , Lane, Thomas S Lane, Deyholos, Michael , Peng, Yanhui , Davitt, Jack , Soltis, Douglas Edward
The ATP-binding cassette (ABC) transporter gene superfamily is ubiquitous among extant organisms and prominently represented in plants. ABC transporters act to transport compounds across cellular membranes and are involved in a diverse range of biological processes. Thus, the applicability to...
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Heuristics Search Project Report: Evaluation of the search algorithims in Multiple Sequence Alignment
Download2006
Technical report TR06-02. Multiple sequence alignment (MSA) is a controversial problem in computational biology. This particular problem computes the similarity based on the biological properties of nuclei acid (or amino acid) among the DNA strands (or protein sequences). In this project, we...
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2003
Chen, Zhi-Zhong, Xu, Ying, Wen, Jianjun, Lin, Guohui, Jiang, Tao, Xu, Dong, Rizzi, Romeo
Technical report TR03-07. Protein NMR peak assignment refers to the process of assigning a group of \"spin systems\" obtained experimentally to a protein sequence of amino acids. The automation of this process is still an unsolved and challenging problem in NMR protein structure determination....