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Skip to Search Results- 1Badr, Dina EFA
- 1Begam, Rowshon A
- 1Damavandi, Babak
- 1De Agostini Verna, Carla
- 1Gardiner, Jason L
- 1Khan, Shanjida
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Fall 2012
In this dissertation, I discuss several important problems in the area of bio-relation discovery (BRD). Discovering bio-relations is an important problem that arises frequently in bioinformatics. It involves identifying relationships (usually pairwise) between bio-entities. These relationships...
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Fall 2014
Most multicellular organisms form tissue networks for transport function. What controls the formation of tissue networks is thus a central question in biology. In animals, the formation of these networks often involves extensive cell movements—movements that are instead prevented in plants by a...
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Fall 2018
Vascular networks transport water, signals and nutrients in both plants and animals; what controls the formation of these networks is thus a central question in biology. In animals, vascular network formation requires direct cell-cell communication and often cell movements, both of which are...
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Fall 2022
To form tissue networks, animal cells migrate and interact through proteins protruding from their plasma membranes. Plant cells can do neither, yet plants form vein networks. How plants do so is unclear, but the prevailing hypothesis proposes that GNOM — a regulator of vesicle formation in...
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Detecting, correcting, and preventing the batch effects in multi-site data, with a focus on gene expression Microarrays
DownloadSpring 2014
Gene expression microarrays are widely used to better understand the complex biological mechanisms inside cells. One of the main obstacles of applying statistical learning algorithms to microarray data is the large gap between the number of features (p) and the number of available instances (n),...
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Fall 2022
Heart transplantation (HTx) is a life-saving intervention for patients with end-stage heart failure. Nonetheless, the development of Chronic Allograft Vasculopathy (CAV) limits the longevity of transplanted cardiac allografts and the survival of recipients. The pathogenesis of CAV begins with a...
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Estimating the Overlap of Top Instances in Lists Ranked by Correlation to Label
Spring 2012
Recent advances in high-throughput technologies, such as genome-wide SNP analysis and microar- ray gene expression profiling, have led to a multitude of ranked lists, where the features (SNPs, genes) are sorted based on their individual correlation with a phenotype. Multiple reviews have shown...
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Exploring the role of the thioredoxin system, peroxiredoxins and glutaredoxins in aluminum and cadmium tolerance in yeast and Arabidopsis thaliana
DownloadFall 2011
Aluminum (Al) and cadmium (Cd) are non-redox active metal ions of agricultural importance. Both are able to induce oxidative damage as a mechanism of toxicity. To increase our understanding of the mechanisms of Al and Cd toxicity and tolerance in plants, the potential role of antioxidant enzymes...
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Expression and purification of recombinant forms of two Arabidopsis thaliana PR-10 homologues (MLP423 and Bet v 1)
DownloadFall 2013
Pathogenesis related 10 (PR-10) proteins have important roles in mediating plant abiotic and biotic stress tolerance. Most of the members of this family possess ribonuclease activity. The homologues of PR-10 (ABR17) protein, MLP423 and Bet v 1, may have similar biological and physiological...