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- 6Single nucleotide polymorphisms
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- 41Roy Berg Kinsella Research Ranch
- 41Roy Berg Kinsella Research Ranch/Journal Articles (Kinsella Ranch)
- 9Biological Sciences, Department of
- 9Biological Sciences, Department of/Journal Articles (Biological Sciences)
- 1Agricultural, Food and Nutritional Science, Department of
- 1Agricultural, Food and Nutritional Science, Department of/Journal Articles (Agricultural, Food and Nutritional Science)
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2004
Wishart, D.S., Stothard, P., Dong, X., Forsythe, I.
PlasMapper is a comprehensive web server that automatically generates and annotates high-quality circular plasmid maps. Taking only the plasmid/vector DNA sequence as input, PlasMapper uses sequence pattern matching and BLAST alignment to automatically identify and label common promoters,...
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PolySearch: A web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites
Download2008
Stothard, P., Damaraju, S., Wishart, D.S., Young, N., Cheng, D., Knox, C.
A particular challenge in biomedical text mining is to find ways of handling ‘comprehensive’ or ‘associative’ queries such as ‘Find all genes associated with breast cancer’. Given that many queries in genomics, proteomics or metabolomics involve these kind of comprehensive searches we believe...
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Prediction of residual feed intake for first lactation dairy cows using orthogonal polynomial random regression
Download2013
Okine, E. K., Goonewardene, L. A., McFadden, T., Basarab, J. A., Wang, Z., Manafiazar, G., Li, P.
Residual Feed Intake (RFI) is a measure of energy efficiency. Developing an appropriate model to predict expected energy intake while accounting for multifunctional energy requirements of metabolic body weight (MBW), empty body weight (EBW), milk production energy requirements (MPER), and their...
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2004
Wang, Z., Goonewardene L. A., Mir, P. S., Mir, Z., Okine, E. K., Marx, T., Spener, D.
The objective was to determine if end-of-test residual metabolizable energy intake (RMEI) is correlated with RMEI values calculated earlier in the test on steers fed two forage (silage) or four forage-grain diets. As the days on test increased the variation in RMEI decreased in all diets. In all...
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2014
Plastow, G., Stothard, P., Moore, S., Bao, H., Meng, Y., Liao, X.
Gene duplication is a widespread phenomenon in genome evolution, and it has been proposed to serve as an engine of evolutionary innovation. In the present study, we performed the first comprehensive analysis of duplicate genes in the bovine genome. A total of 3131 putative duplicated gene pairs...
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Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle
Download2014
Squires, J. J., Moore, S., Stothard, P., Swanson, K. C., Miller, S. P., Abo-Ismail, M. K., Vander Voort, G., Liao, X., Plastow, G., Mandell, I. B.
Background This study was conducted to: (1) identify new SNPs for residual feed intake (RFI) and performance traits within candidate genes identified in a genome wide association study (GWAS); (2) estimate the proportion of variation in RFI explained by the detected SNPs; (3) estimate the...
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Study of Carcass, organ, muscle, fat tissue weight and concentration in rats fed CLA or its precursors by Principal Component Analysis
Download2004
Mir, Z., Wang, Z., Goonewardene, L. A., Okine, E. K., Mir, P. S.
Carcass, organ and muscle weight, and fat tissue data were obtained from 30 weaned male Wistar rats fed one of three diets, (10 rats/diet) over a period of 60 d. The diets were base with synthetic conjugated linoleic acid (CLA), sunflower oil or beef enriched CLA. The CLA diet contained the base...
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The CyberCell Database (CCDB): A comprehensive, self-updating relational database to coordinate and facilitate in silico modeling of Escherichia coli
Download2004
Stothard, P., Rouani, M., Sundararaj, S., Wishart, D.S., Nazhad, B.H., Guo, A., Ellison, M.
The CyberCell Database (CCDB: http://redpoll. pharmacy.ualberta.ca/CCDB) is a comprehensive, web-accessible database designed to support and coordinate international efforts in modeling an Escherichia coli cell on a computer. The CCDB brings together both observed and derived quantitative data...
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2004
The analysis of data containing repeated observations measured on animals (experimental unit) allocated to different treatments over time is a common design in animal science. Conventionally, repeated measures data were either analyzed as a univariate (split-plot in time) or a multivariate ANOVA...
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Tissue distribution in primal cuts of Canadian beef composites and opportunities for harvesting younger and leaner cattle
Download2012-01-01
Goonewardene, Laksiri A., Basarab, John A., Wang, Z., Price, Megan A., Ramsey, P., Marx, T., Aalhus, J., Seneviratne, R. W., Yalingasinghe, W. G. N. P., Okine, Erasmus K.
The objectives were to compare weights and proportions (%) of muscle (M), fat (F) and bone (B) in the carcass, primal cuts (brisket, loin and short loin, chuck, flank, plate, rib, round and shank) and fat depots in three BeefBooster® composites (n = 176) from 274-456 days at slaughter, and...