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Skip to Search Results- 9Linkage disequilibrium
- 7Genetic variation
- 3SINGLE-NUCLEOTIDE POLYMORPHISMS
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- 8Biological Sciences, Department of
- 8Biological Sciences, Department of/Journal Articles (Biological Sciences)
- 5Roy Berg Kinsella Research Ranch
- 5Roy Berg Kinsella Research Ranch/Journal Articles (Kinsella Ranch)
- 1Renewable Resources, Department of
- 1Renewable Resources, Department of/Journal Articles (Renewable Resources)
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Genome-wide analysis of zygotic linkage disequilibrium and its components in crossbred cattle
Download2012
Jiang, Q., Wang, Z., Yang, R. C., Moore, S. S.
Background Linkage disequilibrium (LD) between genes at linked or independent loci can occur at gametic and zygotic levels known asgametic LD and zygotic LD, respectively. Gametic LD is well known for its roles in fine-scale mapping of quantitative trait loci, genomic selection and evolutionary...
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2007
Sperling, F. A. H., MacQuarrie, C. J. K., Langor, D. W.
Mitochondrial cytochrome oxidase I and 11 genes were sequenced for two invasive alien birch (Betula L. [Betulaceae]) leaf-mining sawflies, Profenusa thomsoni (Konow, 1886) (Hymenoptera: Tenthredinidae) and Scolioneura betuleti (King, 1816) (Hymenoptera: Tenthredinidae), accidentally introduced...
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Amino acid polymorphisms in strictly conserved domains of a P-type ATPase HMA5 are involved in the mechanism of copper tolerance variation in Arabidopsis
Download2008
Kimura, K., Southron-Francis, J. L., Iuchi, S., Furuzawa, A., Taylor, G. J., Kobayashi, Y., Koyama, H., Kobayashi, M., Kuroda, K.
Copper (Cu) is an essential element in plant nutrition, but it inhibits the growth of roots at low concentrations. Accessions of Arabidopsis ( Arabidopsis thaliana) vary in their tolerance to Cu. To understand the molecular mechanism of Cu tolerance in Arabidopsis, we performed quantitative trait...
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Repurposing population genetics data to discern genomic architecture: A case study of linkage cohort detection in mountain pine beetle (Dendroctonus ponderosae)
Download2019-01-01
Trevoy, Stephen A.L., Janes, Jasmine K., Muirhead, Kevin, Sperling, Felix A. H.
Genetic surveys of the population structure of species can be used as resources for exploring their genomic architecture. By adjusting filtering assumptions, genomewide single-nucleotide polymorphism (SNP) datasets can be reused to give new insights into the genetic basis of divergence and...
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Depauperate genetic variability detected in the American and European bison using genomic techniques
Download2009
Tokarska, M., Demontis, D., Wójcik, J.M., Gregersen, V.R., Loeschcke, V., Pertoldi, C., Coltman, D.
A total of 929 polymorphic SNPs in EB (out of 54, 000 SNPs screened using a BovineSNP50 Illumina Genotyping BeadChip), and 1, 524 and 1, 403 polymorphic SNPs in WB and PB, respectively, were analysed. EB, WB and PB have all undergone recent drastic reductions in population size. Accordingly, they...
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2007
Schnabel, R. D., Wang, Z., Mannenl, H., Gill, C. A., Van Tassell, C. P., Gao, C., Aerts, J., Williams, J. L., Neto, E. D., Moore, S. S., Matukumalli, L. K., Coppieters, W., McKay, S. D., Taylor, J. F., Crews, D., Murdoch, B. M.
Background Bovine whole genome linkage disequilibrium maps were constructed for eight breeds of cattle. These data provide fundamental information concerning bovine genome organization which will allow the design of studies to associate genetic variation with economically important traits and...
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Genetic variation in height, branch and needle lengths of Pinus sylvestris L. from Siberia tested in Alberta, Canada
Download2003
Dhir, N.K., Rweyongeza, D., Yeh, F.C., Dancik, B.P.
We performed the analysis of variance and covariance on height, branch length, height to branch length ratio, and needle length measurements from thirty open-pollinated families of Pinus sylvestris L. from Siberia, Russia. This progeny trial was replicated on three sites in central Alberta,...
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Common Low-Density Lipoprotein Receptor p.G116S Variant Has a Large Effect on Plasma Low-Density Lipoprotein Cholesterol in Circumpolar Inuit Populations
Download2014-11-20
Dubé, Joseph B., Wang, Jian, Cao, Henian, McIntyre, Adam D., Johansen, Christopher T., Hopkins, Scarlett E., Stringer, Randa, Hosseinzadeh, Siyavash, Kennedy, Brooke A., Ban, Matthew R., Young, T. Kue, Connelly, Philip W., Dewailly, Eric, Bjerregaard, Peter, Boyer, Bert B., Hegele, Robert A.
"Background: Inuit are considered to be vulnerable to cardiovascular disease because their lifestyles are becoming more Westernized. During sequence analysis of Inuit individuals at extremes of lipid traits, we identified 2 nonsynonymous variants in low-density lipoprotein receptor (LDLR), namely...
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2012
Plastow, G., Lu, D., Miller, S., Moore, S., Vander Voort, G., Wang Z., Sargolzaei, M., Li, C., Kelly, M.
Linkage disequilibrium (LD) and the persistence of its phase across populations are important for genomic selection as well as fine scale mapping of quantitative trait loci (QTL). However, knowledge of LD in beef cattle, as well as the persistence of LD phase between crossbreds (C) and purebreds,...