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Population structure and phylogenetic relationships of Ceutorhynchus neglectus (Coleoptera: Curculionidae)
Download2005
Sperling, F. A. H., Dosdall, L. M., Laffin, R. D.
Ceutorhynchus neglectus Blatchley is a weevil that is native to, and widely distributed in, North America. It has life-history characteristics similar to its alien invasive congener, Ceutorhynchus obstrictus (Marsham), the cabbage seedpod weevil. Our study was undertaken to compare the population...
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ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun
Download2005
Ye, C., Wang, J., Li, S., Li, R., Wong, G.K.S., Ye, J., Yang, H., Han, Y., Yu, J.
We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist at high copy numbers across the genome and must not be so old that they are no longer...
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2005
Xia, Q., Chen, J., Dai, M., Ye, C., Wang, J., Li, S., Li, R., Zhou, Z., Ruan, J., Hu, Y., Yu, G., Yang, H., He, X., Yu, Jun, Xiang, Z., Yuan, H., Lu, C., Feng, T.
The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a ~6X draft genome sequence of the domestic silkworm (Bombyx mori ), SilkDB provides an integrated representation of the...
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The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: Evidence for programmed translational frameshifting
Download2008
Rosengarten, R.D., Sperling, E.A., Leys, S.P., Dellaporta, S.L., Moreno, M.A.
Background: Mitochondrial genomes (mtDNA) of numerous sponges have been sequenced as part of an ongoing effort to resolve the class-level phylogeny of the Porifera, as well as to place the various lower metazoan groups on the animal-kingdom tree. Most recently, the partial mtDNA of two glass...
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The probable association of feather mites of the genus Ingrassia (Analgoidea: Xolalgidae) with the blue penguin Eudyptula minor (Aves: Sphenisciformes) in Australia.
Download2008
A new feather mite species, Ingrassia eudyptula n. sp. (Xolalgidae: Ingrassiinae), is described from the blue penguin Eudyptula minor (J. B. Forster, 1781) in Australia. This is the first description of a feather mite species from representatives of the avian order Sphenisciformes, which had...
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The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition
Download2002
Meijer, A. H., Reub, S., Boot, K. J. M., Scarpella, E.
The auxin-inducible homeobox gene Oshox1 of rice (Oryza sativa) is a positive regulator of procambial cell fate commitment, and its overexpression reduces the sensitivity of polar auxin transport (PAT) to the PAT inhibitor 1-N-naphthylphthalamic acid (NPA). Here, we show that wild-type rice...
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The Role of Hydropteris pinnata gen. et. sp. nov. In Reconstructing the cladistics of Heterosporous Ferns.
Download1994
Large segments of intact plants that represent a heterosporous fern have been discovered within an aquatic plant community from the Late Cretaceous St. Mary River Formation near Cardston in southern Alberta, Canada. Branching rhizomes of Hydropteris pinnata gen. et sp. nov. are 1-2 mm wide. They...
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Three-Dimensionally Preserved Integument Reveals Hydrodynamic Adaptations in the Extinct Marine Lizard Ectenosaurus (Reptilia, Mosasauridae)
Download2011
Lindgren, Johan, Everhart, Michael J., Caldwell, Michael W.
The physical properties of water and the environment it presents to its inhabitants provide stringent constraints and selection pressures affecting aquatic adaptation and evolution. Mosasaurs (a group of secondarily aquatic reptiles that occupied a broad array of predatory niches in the...
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2006
Li, R., Zheng, W., Durbin, R., Liu, T., Bolund, L., Dehal, P., Coin, L.J., Coghlan, A., Osmotherly, L., Heriche, J.K., Ruan, J., Li, H., Wang, J., Wong, G., Zhang, Z.
TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively,...
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Unequal recombination and evolution of the mating-type (MAT) loci in the pathogenic fungus Grosmannia clavigera and relatives. G3: Genes, Genomes, Genetics
Download2013-01-01
Hamelin, Richard C., Tsui, Clement K.M., Bohlmann, Jörg, DiGuistini, Scott, Dhillon, Braham, Feau, Nicolas, Wang, Ye
Sexual reproduction in fungi is regulated by the mating-type (MAT) locus where recombination is suppressed. We investigated the evolution of MAT loci in eight fungal species belonging to Grosmannia and Ophiostoma (Sordariomycetes, Ascomycota) that include conifer pathogens and beetle symbionts....