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Fall 2013
For decades, scientists from every discipline have struggled to understand the mechanism of biological self-assembly, which allows proteins and nucleic acids to fold reliably into functional three-dimensional structures. Such an understanding may hold the key to eliminating diseases such as...
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Fall 2015
Folding of biomolecules is an important problem in structural biology. The physical folding can be projected as a diffusive search over an energy landscape whose dimensions scale by all the internal degrees of freedom which a biomolecule possesses. To explore this idea, folding is studied from...
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Spring 2016
In this thesis we study MT from giant and subgiant donors in binary stars. We develop a MT simulation framework based on the MESA set of stellar libraries, which is suitable to study extremely high MT rates and predict the stability of MT. We find that the MT from giant donors is much more stable...
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Numerical Simulations of Anelastic and Boussinesq Rotating Convection with Radial Entropy Gradient Boundary Conditions
DownloadFall 2017
Observations from the gas giants Jupiter or Saturn allow for researchers to construct geophysical fluid dynamical numerical models in an attempt to replicate the observed features. Most models aim at replicating the zonal jets and the eddies observed on these gas giants to understand how they are...
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Spring 2017
In this dissertation we focus on numerical models of rotating anelastic convection, in particular the entropy boundary condition, with application to the giant planets. The first chapter details atmospheric features of giant planets and the numerical formulation of anelastic convection. The...
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Fall 2013
Protein folding involves a stochastic search through the configurational energy landscape towards the native structure. Although most proteins have evolved to fold efficiently into a unique native structure, misfolding (the formation of non-native structures) occurs frequently in vivo causing a...