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Genomic analysis of hybridization between the spruce budworm species Choristoneura fumiferana, C. occidentalis, and C. biennis (Lepidoptera: Tortricidae)
DownloadFall 2014
The spruce budworm (Choristoneura fumiferana) species complex is a destructive group of insect defoliators of North American conifers that have a remarkable propensity to hybridize ex situ despite little evidence for hybridization in nature. Introgression between species is increasingly...
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2023-11-01
SSHRC CG awarded 2024: Society, in the early twenty-first century, has been shaped by new knowledge of genomics, also known as the science of DNA, yet Indigenous peoples remain underrepresented in research and leadership roles in genome and other science, technology, math, and engineering fields....
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Identification of genes and gene expression associated with dispersal capacity in the mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae)
Download2021-07-01
Shegelski, Victor A., Evenden, Maya L., Huber, Dezene P. W., Sperling, Felix A. H.
Dispersal flights by the mountain pine beetle have allowed range expansion and major damage to pine stands in western Canada. We asked what the genetic and transcriptional basis of mountain pine beetle dispersal capacity is. Using flight mills, RNA-seq and a targeted association study, we...
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Improving the accuracy of protein secondary structure prediction using structural alignment
Download2006
Gallin, W.J., Wishart, D.S., Montgomerie, S., Sundararaj, S.
Background: The accuracy of protein secondary structure prediction has steadily improved over the past 30 years. Now many secondary structure prediction methods routinely achieve an accuracy (Q3) of about 75%. We believe this accuracy could be further improved by including structure (as opposed...
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2017-01-30
Several strains of Bacillus spp. were isolated from across Algeria, the largest African country. The strains were bioprospected from several economically-relevant environments such as oil-mining sites, salty lakes, coal mines, deserts and oil-contaminated water basins. Hundreds of isolates were...
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Physiological and genomic characterization of six virulent bacteriophages of Shiga toxin-producing Escherichia coli O157:H7 for biocontrol and detection applications
DownloadSpring 2019
Despite multiple control strategies in all steps of the food production chain, outbreaks of foodborne pathogens are common worldwide. More effective ways to prevent, eliminate or at least detect their presence before products reach consumers are of great interest to the general public, the food...
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Reflections on the Cost of "Low-Cost" Whole Genome Sequencing: Framing the Health Policy Debate
Download2014-10-24
Miller, Fiona A., Hogarth, Stuart, Evans, Jim, McCabe, Christopher, Pullman, Daryl, Joly, Yann, Szego, Michael J., Bubela, Tania, Fishman, Jennifer, Sankar, Pamela, Cook-Deegan, Robert, Biesecker, Barbara, Ravitsky, Vardit, Borry, Pascal, K. Cho, Mildred, Ungar, Wendy, J., Ossorio, Pilar, Kato, Kazuto, Wilson, Brenda, McGuire, Amy, Soo-Jin Lee, Sandra, Caulfield, Timothy, Rothenberg, Karen, Rousseau, Francois, Etchegary, Holly, Carroll, June C.
The cost of whole genome sequencing is dropping rapidly. There has been a great deal of enthusiasm about the potential for this technological advance to transform clinical care. Given the interest and significant investment in genomics, this seems an ideal time to consider what the evidence tells...
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2008-01-01
Caulfield, Timothy, McGuire, Amy L., Cho, Mildred, Buchanan, Janet A., Burgess, Michael M., Danilczyk, Ursula, Diaz, Christina M., Fryer-Edwards, Kelly, Green, Shane K., Hodosh, Marc A., Juengst, Eric T., Kaye, Jane, Kedes, Laurence, Knoppers, Bartha M., Lemmens, Trudo, Meslin, Eric M., Murphy, Juli, Nussbaum, Robert L., Otlowski, Margaret, Pullman, Daryl, Ray, Peter N., Sugarman, Jeremy, Timmons, Michael
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Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
Download2015
Cox, Faith, Janssen, Peter H., Henderson, Gemma, Jonker, Arjan, Young, Wayne, Ganesh, Siva
Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was...