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2007
Guan, L., Guo, Y., Liu, T., Li, H., Wang, J., Zheng, W.M., Wong, G.K.
Background The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for intra-species alignments, among which are successful ones with high specificity and speed. The other group contains more...
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2005-09-01
Zhang, Xiuqing , Bolund, Lars , Bao, Jingyue , Ma, Ligeng , Wong, Gane K., Deng, Xing Wang , Wang, Jian , Liu, Xigang , Yuan, Longping , Li, Jian , Zhao, Hongyu , Pedersen, Soren , Wang, Xiangfeng , Wang, Jun , Sun, Ning , Cao, Mengliang , Chen, Chen , Jiao, Yuling , Li, Lin , Su, Ning
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Acid-base properties of cyanobacterial surfaces II: Silica as a chemical stressor influencing cell surface reactivity
Download2008
Owttrim, G.W., Lalonde, S.V., Smith, D.S., Konhauser, K.O.
Bacteria grow in complex solutions where the adsorption of aqueous species and nucleation of mineral phases on the cell surface may interfere with membrane-dependent homeostatic functions. While previous investigations have provided evidence that bacteria may alter their surface chemical...
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Alternative Requirements for Vestigial, Scalloped, and Dmef2 during Muscle Differentiation in Drosophila melanogaster
Download2009
Bell, J. B., Deng, H., Simmonds, A. J., Hughes, S. C.
Abstract: Vertebrate development requires the activity of the myocyte enhancer factor 2 (mef2) gene family for muscle cell specification and subsequent differentiation. Additionally, several muscle-specific functions of MEF2 family proteins require binding additional cofactors including members...
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Autoregulation of RNA helicase expression in response to temperature stress in Synechocystis spCC 6803
Download2012
Owttrim, George W., Chamot, Danuta, Rosana, Albert R. R.
RNA helicases are ubiquitous enzymes whose modification of RNA secondary structure is known to regulate RNA function. The pathways controlling RNA helicase expression, however, have not been well characterized. Expression of the cyanobacterial RNA helicase, crhR, is regulated in response to...
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BGI-RIS: An integrated information resource and comparative analysis workbench for rice genomics
Download2004
Wang, J., Chen, Y., Zhao, H., Dai, M., Zhao, W., Huang, X., Zhang, Y., Ren. X., Jiao, Y., Wong, G., Wei, S., Ni, P., Yu, J., Zhang, J., Li, S., Yang, H., Fu, J., He, X.
Rice is a major food staple for the world's population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing, information analysis and biological research of the rice and other crop genomes. In order to facilitate...
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2014-10-27
Wu, Xiaolei , Wafula, Eric , Yan, Zhixiang , Kutchan, Toni M. , Gitzendanner, Matthew A, Shaw, Jonathan A., Chen, Tao. , Wickett, Norman J., Nguyen, Nam , Burleigh, J Gordon , Miles, Nicholas W. , Soltis, Pamela S. , Melkonian, Michael , Deyholos, Michael K. , Matasci, Naim , DeGironimo, Lisa , Samudrala, Ram , Leebens-Mack, Jim , Mirarab, Siavash , Barker, Michael , Sun, Xiao , Soltis, Douglas E. , Rolf, Megan , Tian, Zhijian , Wong, Gane K, Rothfels, Carl , Pokorny, Lisa , Zhang, Yong , Ayyampalayam, Saravanaraj , Graham, Sean W. , Roure, Béatrice, Der, Joshua P., Wang, Jun , Mathews, Sarah , Surek, Barbara , Baucom, Regina S. , Ruhfel, Brad R. , Villarreal, Juan C., Stevenson, Dennis W. , Hung, Ling-Hong , Warnow, Tandy , Philippe, Hervé , Carpenter, Eric J.
The 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages across the Viridiplantae (green plants) clade. Here, we describe how to access the data used in a...
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Disentangling detoxification: Gene expression analysis of feeding mountain pine beetle illuminates molecular-level host chemical defense detoxification mechanisms
Download2013-01-01
Bohlmann, Jörg, Bonnett, Tiffany R., Pitt, Caitlin, Keeling, Christopher I., Yuen, Macaire M. S., Huber, Dezene P. W., Robert, Jeanne A.
The mountain pine beetle, Dendroctonus ponderosae, is a native species of bark beetle (Coleoptera: Curculionidae) that caused unprecedented damage to the pine forests of British Columbia and other parts of western North America and is currently expanding its range into the boreal forests of...
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Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes
Download2012-11-21
Zhang, Yong , Wu, Xiaolei , Patterson, Jordan , Villarreal, Juan C. , Jordon-Thaden, Ingrid , Bruskiewich, Richard , Sage, Rowan F. , Goh, Falicia , Wong, Gane K., Chase, Mark W. , Stewart Jr, C Neal , Clarke, Neil D. , Burris, Jason N. , Ralph, Paula , Tian, Zhijian , Myburg, Henrietta , Surek, Barbara. , Rolf, Megan. , Graham, Sean , Thomsen, Christina J. , Johnson, Marc TJ. , Miles, Nicholas , Carrigan, Charlotte T. , Greiner, Stephan , Soltis, Pamela , Leebens-Mack, James , Edger, Patrick P. , Soltis, Douglas , Kutchan, Toni M. , Melkonian, Michael , Covshoff, Sarah , Carpenter, Eric J., Deyholos, Michael K. , Pires, J Chris , Hibberd, Julian M. , Stevenson, Dennis
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Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fat bodies
Download2010-01-01
Keeling, Christopher I., Bearfield, Jeremy C., Blomquist, Gary J., Schlauch, Karen, Tittiger, Claus, Young, Sharon, Aw, Tidiane
Background The mountain pine beetle (Dendroctonus ponderosae) is a significant coniferous forest pest in western North America. It relies on aggregation pheromones to colonize hosts. Its three major pheromone components, trans-verbenol, exo-brevicomin, and frontalin, are thought to arise via...