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2016-01-01

Sperling, Felix A. H., Murray, Brent W., Batista, Philip D., Janes, Jasmine K., Boone, Celia K.

Assessments of population genetic structure and demographic history have traditionally been based on neutral markers while explicitly excluding adaptive markers. In this study, we compared the utility of putatively adaptive and neutral single-nucleotide polymorphisms (SNPs) for inferring mountain...

2009-01-01

Docking, Roderick T., Mardis, Elaine, Hamelin, Richard C., Jones, Steven J. M., Marra, Marco A., Seidel, Michael, Chan, Simon K., Breuil, Colette, Liao, Nancy Y., Birol, Inanc, Robertson, Gordon, Holt, Robert A., Platt, Darren, Bohlmann, Jörg, DiGuistini, Scott, Hirst, Martin

Sequencing-by-synthesis technologies can reduce the cost of generating de novo genome assemblies. We report a method for assembling draft genome sequences of eukaryotic organisms that integrates sequence information from different sources, and demonstrate its effectiveness by assembling an...

2013-01-01

Chan, Simon K., Henderson, Hannah, Sperling, Felix A. H., Docking, Roderick T., Palmquist, Diana L., Nguyen, Anh, Zhao, Yongjun, Birol, Inanc, Pandoh, Pawan, Li, Maria, Taylor, Greg A., Liao, Nancy Y., Moore, Richard, Bohlmann, Joerg, Janes, Jasmine K., Jackman, Shaun D., Yuen, Macaire M. S., Huber, Dezene P. W., Jones, Steven J. M., Keeling, Christopher I.

Background The mountain pine beetle, Dendroctonus ponderosae Hopkins, is the most serious insect pest of western North American pine forests. A recent outbreak destroyed more than 15 million hectares of pine forests, with major environmental effects on forest health, and economic effects on the...

2010-01-01

Henderson, Hannah, Keeling, Christopher I.Wang, Ye, Docking, Roderick T., Breuil, Colette, Li, Maria, Jones, Steven J. M., Liao, Nancy Y., Hesse-Orce, Uljana, DiGuistini, Scott, Robertson, Gordon, Bohlmann, Jörg, Holt, Robert A.

Background Grosmannia clavigera is a bark beetle-vectored fungal pathogen of pines that causes wood discoloration and may kill trees by disrupting nutrient and water transport. Trees respond to attacks from beetles and associated fungi by releasing terpenoid and phenolic defense compounds. It is...

2014-01-01

Sperling, Felix A. H., Murray, Brent W., Li, Yisu, Coltman, David W., Bohlmann, Joerg, Janes, Jasmine K., Cooke, Janice E. K., Boone, Celia K., Huber, Dezene P.W., Keeling, Christopher I., Yuen, Macaire M. S.

The mountain pine beetle (MPB; Dendroctonus ponderosae Hopkins), a major pine forest pest native to western North America, has extended its range north and eastward during an ongoing outbreak. Determining how the MPB has expanded its range to breach putative barriers, whether physical...

2019-01-01

Wittische, Julian, Janes, Jasmine K., James, Patrick M. A.

The current mountain pine beetle (MPB; Dendroctonus ponderosae Hopkins, 1902) outbreak has reached more than 25 million hectares of forests in North America, affecting pine species throughout the region and substantially changing landscapes. However, landscape features that enhance or limit...

2016-01-01

Janes, Jasmine K., Roe, Amanda D., Rice, A. V., Gorrell, Jamieson C., Coltman, D. W., Langor, David W., Sperling, Felix A.

An understanding of mating systems and fine-scale spatial genetic structure is required to effectively manage forest pest species such as Dendroctonus ponderosae (mountain pine beetle). Here we used genome-wide single-nucleotide polymorphisms to assess the fine-scale genetic structure and mating...

2019-01-01

Trevoy, Stephen A.L., Janes, Jasmine K., Muirhead, Kevin, Sperling, Felix A. H.

Genetic surveys of the population structure of species can be used as resources for exploring their genomic architecture. By adjusting filtering assumptions, genomewide single-nucleotide polymorphism (SNP) datasets can be reused to give new insights into the genetic basis of divergence and...

2019-01-01

Cullingham, Catherine I., Janes, Jasmine K., Hamelin, Richard C., James, Patrick M.A., Murray, Brent W., Sperling, Felix A.H.

Environmental change is altering forest insect dynamics worldwide. As these systems change, they pose significant ecological, social, and economic risk through, for example, the loss of valuable habitat, green space, and timber. Our understanding of such systems is often limited by the complexity...

2013-01-01

Hall, Dawn E., Arango-Velez, Adriana, Dullat, Harpreet K., Keeling, Christopher I., Breuil, Colette, Liao, Nancy Y., Henderson, Hannah, Bohlmann, Jörg, Cooke, Janice E. K., Quesada, Alfonso L., Jones, Steven J. M., Chan, Simon K., Jancsik, Sharon, Docking, Roderick T., Li, Maria, Yuen, Macaire M. S.

Background The mountain pine beetle (MPB, Dendroctonus ponderosae) epidemic has affected lodgepole pine (Pinus contorta) across an area of more than 18 million hectares of pine forests in western Canada, and is a threat to the boreal jack pine (Pinus banksiana) forest. Defence of pines against...