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SuperPose: A simple server for sophisticated structural superposition

  • Author(s) / Creator(s)
  • The SuperPose web server rapidly and robustly calculates both pairwise and multiple protein structure superpositions using a modified quaternion eigenvalue approach. SuperPose generates sequence alignments, structure alignments,PDB(Protein Data Bank) coordinates andRMSDstatistics, as well as difference distanceplotsandimages (both staticandinteractive) of the superimposed molecules. SuperPose employs a simple interface that requires only PDB files or accession numbers as input. All other superposition decisions are made by the program. SuperPose is uniquely able to superimpose structures that differ substantially in sequence, size or shape. It is also capable of handling a much larger range of superposition queries and situations thanmanystandalone programs and yields results that are intuitively more in agreement with known biological or structural data. The SuperPose web server is freely accessible at http://wishart.biology.ualberta.ca/SuperPose/.

  • Date created
    2004
  • Subjects / Keywords
  • Type of Item
    Article (Published)
  • DOI
    https://doi.org/10.7939/R3P85Q
  • License
    The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. Copyright 2004, the authors
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  • Citation for previous publication
    • R Maiti, GH Van Domselaar, H Zhang and DS Wishart. "SuperPose: A simple server for sophisticated structural superposition." Nucleic Acids Research (Web Server issue 32 (2004): W590-594. DOI: 10.1093/nar/gkh477