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Skip to Search Results- 29Agricultural, Food and Nutritional Science, Department of
- 29Agricultural, Food and Nutritional Science, Department of/Journal Articles (Agricultural, Food and Nutritional Science)
- 4Roy Berg Kinsella Research Ranch
- 4Roy Berg Kinsella Research Ranch/Journal Articles (Kinsella Ranch)
- 4PigGen Canada
- 4PigGen Canada/Journal Articles
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Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity
Download2013
Lee, Kyung-Tai, Ahn, Sungmin, Choy, Yun H., Lee, Sang-Heon, Jang, Gul-Won, Liao, Xiaoping, Lee, Seunghwan, Lee, Sung-Yeoun, Chung, Won-Hyong, Stothard, Paul, Choi, Jung-Woo, Kim, Tae-Hun, Kim, Bumsoo, Kim, Jiwoong, Lim, Dajeong, Moore, Stephen S., Kim, Namshin
Background Hanwoo (Korean cattle), which originated from natural crossbreeding between taurine and zebu cattle, migrated to the Korean peninsula through North China. Hanwoo were raised as draft animals until the 1970s without the introduction of foreign germplasm. Since 1979, Hanwoo has been bred...
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2005
Wishart, David S., Shrivastava, Savita, Ellison, Michael, Guo, Anchi, Cruz, Joseph, van Domselaar, Gary, O'Neill, Brian, Stothard, Paul
BacMap is an interactive visual database containing fully labeled, zoomable and searchable chromosome maps from more than 170 bacterial (archaebacterial and eubacterial) species. It uses a recently developed visualization tool (CGView) to generate high-resolution circular genome maps from...
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2004
Wishart, David S., Dong, Xaoli, Forsythe, Ian J., Stothard, Paul
PlasMapper is a comprehensive web server that automatically generates and annotates high-quality circular plasmid maps. Taking only the plasmid/vector DNA sequence as input, PlasMapper uses sequence pattern matching and BLAST alignment to automatically identify and label common promoters,...
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2006
Chang, Zhan, Hassanali, Murtaza, Wishart, David S., Stothard, Paul, Woolsey, Jennifer, Guo, AnChi, Shrivistava, Savita, Knox, Craig
DrugBank is a unique bioinformatics/cheminformatics resource that combines detailed drug (i.e. chemical) data with comprehensive drug target (i.e. protein) information. The database contains >4100 drug entries including >800 FDA approved small molecule and biotech drugs as well as >3200...
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2013
Duggan, Thomas, Broadhurst, David I., St. George, M., Sacher, Jessica, Sykes, B.D., Curtis, Jonathan M., Wu, Fang, Quiroga, Ariel, Daude, N., Afzal Javed, M., Kovalchuk, O., Wishart, D., Arutyunov, Denis, Li, Liang, Wong, Gane Ka-Shu, Cass, C., Stuart, David, Glaves, J.P., Simpson, David, Fahlman, Richard P., Lehner, Richard, Wishart, David S., Westaway, D., Kramer, David, Lai, Raymond, Szymanski, Christine M., Damaraju, Sambasivarao, Tuszynski, J.
Includes presentation abstracts for authors listed as well as abstracts for posters by K. Marx, A. Kiehne, M. Meyer; Saifur R. Khan, Argishti Baghdasarian, Richard P. Fahlman, Arno G. Siraki; S.N. Reinke, D.I. Broadhurst, C. Power; Shereen A. Elbayomy, Mark T. McDermott; Simon Ng, Mohammad R....
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Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus PRRSV reveals pathway differences between pigs with alternate genotypes for a major host response QTL
Download2016-03-08
Bao, Hua, Schroyen, Martine, Rowland, Robert R.R., Guan, Le L., Stothard, Paul, Reecy, James M., Fritz-Waters, Eric, Koltes, James E., Kommadath, Arun, Plastow, Graham S., Eisley, Christopher, Tuggle, Christopher K. , Dekkers, Jack C.M., Lunney, Joan K., Choi, Igseo
Background A region on Sus scrofa chromosome 4 (SSC4) surrounding single nucleotide polymorphism (SNP) marker WUR10000125 (WUR) has been reported to be strongly associated with both weight gain and serum viremia in pigs after infection with PRRS virus (PRRSV). A proposed causal mutation in the...
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Differences in Whole Blood Gene ExpressionAssociated with Infection Time-Course andExtent of Fetal Mortality in a ReproductiveModel of Type 2 Porcine Reproductive andRespiratory Syndrome Virus (PRRSV)Infection
Download2016-04-19
Wilkinson, Jamie M., Ladinig, Andrea, Bao, Hua, Kommadath, Arun, Stothard, Paul, Lunney, Joan K., Harding, John C. S., Plastow, Graham S.
Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) infection of pregnantfemales causes fetal death and increased piglet mortality, but there is substantial variationin the extent of reproductive pathology between individual dams. This study used RNA-sequencing to characterize the whole...
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2012
Wang, Lusheng, Moore, Steve S., Cai, Zhipeng, Goebel, Randy, Lin, Guohui, Wang, Yining, Stothard, Paul
Background Single nucleotide polymorphism (SNP) genotyping assays normally give rise to certain percents of no-calls; the problem becomes severe when the target organisms, such as cattle, do not have a high resolution genomic sequence. Missing SNP genotypes, when related to target traits, would...
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Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus
Download2016
Ladinig, Andrea, Stothard, Paul, Bao, Hua, Hong, Linjun, Lunney, Joan K., Harding, John C. S., Wilkinson, Jamie M., Plastow, Graham S.
Background Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) infection of pregnant pigs can result in congenital infection and ultimately fetal death. Little is known about immune responses to infection at the maternal-fetal interface and in the fetus itself, or the molecular events...
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Genome sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex
Download2008
Lynch, Karlene H., Shrivastava, Savita, Seed, Kimberley D., Goudie, Amanda D., Wishart, David S., Stothard, Paul, Dennis, Jonathan J.
Background The Burkholderia cepacia complex (BCC) is a versatile group of Gram negative organisms that can be found throughout the environment in sources such as soil, water, and plants. While BCC bacteria can be involved in beneficial interactions with plants, they are also considered...