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Skip to Search Results- 10Cooke, Janice E. K.
- 10Hamelin, Richard C.
- 5Murray, Brent W.
- 5Sperling, Felix A. H.
- 4Coltman, David W.
- 3Bohlmann, Jörg
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A species-diagnostic SNP panel for discriminating lodgepole pine, jack pine, and their interspecific hybrids
Download2013-01-01
Dang, S. , Cullingham, Catherine I. , Cooke, Janice E. K., Coltman, David W.
Accurate stock identification is important for forest management, yet this can be a challenge for tree species that hybridize naturally. Species discriminating molecular markers provide a means to identify stock with high accuracy. In Canada, lodgepole pine (Pinus contorta Dougl. ex Loud. var....
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Adaptive and neutral markers both show continent-wide population structure of mountain pine beetle (Dendroctonus ponderosae)
Download2016-01-01
Sperling, Felix A. H., Murray, Brent W., Batista, Philip D., Janes, Jasmine K., Boone, Celia K.
Assessments of population genetic structure and demographic history have traditionally been based on neutral markers while explicitly excluding adaptive markers. In this study, we compared the utility of putatively adaptive and neutral single-nucleotide polymorphisms (SNPs) for inferring mountain...
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2020-01-01
Thompson, Kirsten M., Huber, Dezene P. W., Murray, Brent W.
The mountain pine beetle, Dendroctonus ponderosae (Coleoptera: Curculionidae) is a major forest pest of pines in western North America. Beetles typically undergo a one-year life cycle with larval cold hardening in preparation for overwintering. Two-year life cycle beetles have been observed but...
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Characterizing the physical and genetic structure of the lodgepole pine × jack pine hybrid zone: mosaic structure and differential introgression
Download2012-01-01
Coltman, David W., James, Patrick M. A., Cullingham,Catherine I., Cooke, Janice E. K.
Understanding the physical and genetic structure of hybrid zones can illuminate factors affecting their formation and stability. In north-central Alberta, lodgepole pine (Pinus contorta Dougl. ex Loud. var. latifolia) and jack pine (Pinus banksiana Lamb) form a complex and poorly defined hybrid...
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Comparative genomics of the chitinase gene family in lodgepole and jack pines: contrasting responses to biotic threats and landscape level investigation of genetic differentiation.
Download2021-02-01
Peery, Rhiannon M., McAllister, Chandra H., Cullingham, Catherine I., Mahon, Elizabeth L., Arango-Velez, Adriana, Cooke, Janice E. K.
The sister species, lodgepole pine (Pinus contorta var. latifolia Engelm.) and jack pine (Pinus banksiana Lamb), face pressures from a multitude of biotic agents, including mountain pine beetle (Dendroctonus ponderosae Hopkins, 1902) and their pathogenic fungal associates (e.g., Grosmannia...
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2012-01-01
Worldwide, forest pathogens are a major cause of forest disturbances and can impact economic revenues and endanger host species and their ecosystems. Genomics represents one of the most promising avenues to better understand and prevent forest disease epidemics. Pathogen genome characterization...
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De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
Download2009-01-01
Docking, Roderick T., Mardis, Elaine, Hamelin, Richard C., Jones, Steven J. M., Marra, Marco A., Seidel, Michael, Chan, Simon K., Breuil, Colette, Liao, Nancy Y., Birol, Inanc, Robertson, Gordon, Holt, Robert A., Platt, Darren, Bohlmann, Jörg, DiGuistini, Scott, Hirst, Martin
Sequencing-by-synthesis technologies can reduce the cost of generating de novo genome assemblies. We report a method for assembling draft genome sequences of eukaryotic organisms that integrates sequence information from different sources, and demonstrate its effectiveness by assembling an...
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Effect of water stress and plant defense stimulation on monoterpene emission from a historical and a new pine host of the mountain pine beetle
Download2011-01-01
Cooke, Janice E. K., Blanchet, F. Guillaume, Lusebrink, Inka, Erbilgin, Nadir, Evenden, Maya L.
The mountain pine beetle (Dendroctonus ponderosae, MPB) has killed millions of lodgepole pine (Pinus contorta) trees in Western Canada and recent range expansion has resulted in attack of jack pine (Pinus banksiana) in Alberta. Establishment of MPB in the Boreal forest will require use of jack...
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Fine-scale genetic diversity and relatedness in fungi associated with the mountain pine beetle
Download2019-01-01
Tsui, Clement K. M., Beauseigle, Stephanie, Ojeda Alayon, Dario I., Rice, Adrianne V., Cooke, Janice E. K., Sperling, Felix A. H., Roe, Amanda D., Hamelin, Richard C.
The mountain pine beetle (MPB; Dendroctonus ponderosae Hopkins, 1902) forms beneficial symbiotic associations with fungi. Here we explored the fine-scale spatial genetic structure of three of those fungi using single nucleotide polymorphism. We found that single mated pairs of beetles carry not...
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Genetic and genomic evidence of niche partitioning and adaptive radiation in mountain pine beetle fungal symbionts
Download2017-01-01
Ojeda Alayon, Dario I., Tsui, Clement K.M., Feau, Nicolas, Capron, Arnaud, Dhillon, Braham, Zhang, Yiyuan, Massoumi Alamouti, Sepideh, Boon, Celia K., Carroll, Allan L., Cooke, Janice E.K., Roe, Amanda D., Sperling, Felix A.H., Hamelin, Richard C.
Bark beetles form multipartite symbiotic associations with blue stain fungi (Ophiostomatales, Ascomycota). These symbionts play an important role during the beetle’s life cycle by providing nutritional supplementation, overcoming tree defenses and modifying host tissues to favor...