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Permanent link (DOI): https://doi.org/10.7939/R34F1MX9V

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BacMap: An interactive picture atlas of annotated bacterial genomes Open Access

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Author or creator
Stothard, Paul
van Domselaar, Gary
Shrivastava, Savita
Guo, Anchi
O'Neill, Brian
Cruz, Joseph
Ellison, Michael
Wishart, David S.
Additional contributors
Subject/Keyword
Database
Prediction
Type of item
Journal Article (Published)
Language
English
Place
Time
Description
BacMap is an interactive visual database containing fully labeled, zoomable and searchable chromosome maps from more than 170 bacterial (archaebacterial and eubacterial) species. It uses a recently developed visualization tool (CGView) to generate high-resolution circular genome maps from sequence feature information. Each map includes an interface that allows the image to be expanded and rotated. In the default view, identified genes are drawn to scale and colored according to coding directions. When a region of interest is expanded, gene labels are displayed. Each label is hyperlinked to a custom ‘gene card’ which provides several fields of information concerning the corresponding DNA and protein sequences. Each genome map is searchable via a local BLAST search and a gene name/synonym search. BacMap is freely available at  http://wishart.biology.ualberta.ca/BacMap/
.

Date created
2005
DOI
doi:10.7939/R34F1MX9V
License information
© 2005 Stothard, P., van Domselaar, G., Shrivastava, S., Guo, A., O'Neill, B., Cruz, J., Ellison, M., & Wishart, D.S. This version of this article is open access and can be downloaded and shared. The original author(s) and source must be cited.
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Citation for previous publication
Stothard, Paul, van Domselaar, Gary, Shrivastava, Savita, Guo, Anchi, O'Neill, Brian, Cruz, Joseph, Ellison, Michael, & Wishart, David S. (2005). BacMap: An interactive picture atlas of annotated bacterial genomes. Nucleic Acids Research, 33(Suppl. 1), D317-D320.  https://dx.doi.org/10.1093/nar/gki075

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