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Permanent link (DOI): https://doi.org/10.7939/R3SF2MR4G

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Whole genome sequence analysis of an alachlor and endosulfan degrading Pseudomonas strain W15Feb9B isolated from Ochlockonee River, Florida Open Access

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Author or creator
Chauhan, Ashvini
Pathak, Ashish
Ewida, Ayman Y. I.
Griffiths, Zabrenna
Stothard, Paul
Additional contributors
Subject/Keyword
Endosulfan
Biodegradation
Pseudomonas
Whole Genome Sequencing (WGS)
Alachlor
Type of item
Journal Article (Published)
Language
English
Place
Time
Description
We recently isolated a Pseudomonas sp. strain W15Feb9B from Ochlockonee River, Florida and demonstrated potent biodegradative activity against two commonly used pesticides - Alachlor [(2-chloro-2′,6′-diethylphenyl-N (methoxymethyl)acetanilide)] and Endosulfan [(6,7,8,9,10,10-hexachloro-1,5,5a,6,9,9a-hexahydro-6,9methano-2,3,4-benzo(e)di-oxathiepin-3-oxide], respectively. To further identify the repertoire of metabolic functions possessed by strain W15Feb9B, a draft genome sequence was obtained, assembled, annotated and analyzed. The genome sequence of strain 2385 has been deposited in GenBank under accession number JTKF00000000; BioSample number SAMN03151543. The sequences obtained from strain 2385 assembled into 192 contigs with a genome size of 6,031,588, G + C content of 60.34, and 5512 total number of putative genes. RAST annotated a total of 542 subsystems in the genome of strain W15Feb9B along with the presence of 5360 coding sequences. A genome wide survey of strain W15Feb9B indicated that it has the potential to degrade several other pollutants including atrazine, caprolactam, dioxin, PAHs (such as naphthalene) and several chloroaromatic compounds.
Date created
2016
DOI
doi:10.7939/R3SF2MR4G
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Attribution-NonCommerical-NoDerivs 4.0 International
Citation for previous publication
Chauhan, A., Pathak, A., Ewida, A. Y. I., Griffiths, Z., & Stothard, P. (2016). Whole genome sequence analysis of an alachlor and endosulfan degrading Pseudomonas strain W15Feb9B isolated from Ochlockonee River, Florida. Genomics Data, 8, 134-138.  http://dx.doi.org/10.1016/j.gdata.2016.05.008

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