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Permanent link (DOI): https://doi.org/10.7939/R3DB82

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Data access for the 1,000 Plants (1KP) project Open Access

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Author or creator
Matasci, Naim
Hung, Ling-Hong
Yan, Zhixiang
Carpenter, Eric J.
Wickett, Norman J.
Mirarab, Siavash
Nguyen, Nam
Warnow, Tandy
Ayyampalayam, Saravanaraj
Barker, Michael
Burleigh, J Gordon
Gitzendanner, Matthew A
Wafula, Eric
Der, Joshua P.
Roure, Béatrice
Philippe, Hervé
Ruhfel, Brad R.
Miles, Nicholas W.
Graham, Sean W.
Mathews, Sarah
Surek, Barbara
Melkonian, Michael
Soltis, Douglas E.
Soltis, Pamela S.
Rothfels, Carl
Pokorny, Lisa
Shaw, Jonathan A.
DeGironimo, Lisa
Stevenson, Dennis W.
Villarreal, Juan C.
Chen, Tao.
Kutchan, Toni M.
Rolf, Megan
Baucom, Regina S.
Deyholos, Michael K.
Samudrala, Ram
Tian, Zhijian
Wu, Xiaolei
Sun, Xiao
Zhang, Yong
Wang, Jun
Leebens-Mack, Jim
Wong, Gane K
Additional contributors
Subject/Keyword
Viridiplantae
Biodiversity
Transcriptomes
Phylogenomics
Interactions
Pathways
Type of item
Journal Article (Published)
Language
English
Place
Time
Description
The 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages across the Viridiplantae (green plants) clade. Here, we describe how to access the data used in a phylogenomics analysis of the first 85 species, and how to visualize our gene and species trees. Users can develop computational pipelines to analyse these data, in conjunction with data of their own that they can upload. Computationally estimated protein-protein interactions and biochemical pathways can be visualized at another site. Finally, we comment on our future plans and how they fit within this scalable system for the dissemination, visualization, and analysis of large multi-species data sets.
Date created
2014/10/27
DOI
doi:10.7939/R3DB82
License information
Rights
© 2014 Matasci et al. licensee BioMed Central Ltd.
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Copyright note: � 2014 Matasci et al.; licensee BioMed Central Ltd.
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